csvstat: sequence item 0: expected string, int found
Created by: alimanfoo
On a particular file, csvstat got half-way through generating a report when it threw an error...
$ csvstat --tab multiAllele-PF20-1.0.20110701.tab
1. Chr
Nulls: No
Unique values: 14
5 most frequent values:
MAL14: 16683
MAL13: 14670
MAL12: 10112
MAL11: 9020
MAL9: 7160
Max length: 5
2. Pos
Nulls: No
Min: 12048
Max: 3255686
Sum: 104682476273
Mean: 1009990
Median: 851416
Unique values: 101373
5 most frequent values:
500304: 4
262319: 3
193593: 3
879671: 3
191113: 3
3. PV0002-C
Nulls: No
sequence item 0: expected string, int found
Here's a sample of the file...
Chr Pos PV0002-C PV0004-C PV0006-C PV0008-C PV0020-C PV0023-C PV0025-C PV0028-C PV0031-C PV0035-C PV0037-C PV0041-C PV0046-C PV0048-C MAL1 91099 0 0 0 0 1 0 0 1 1 0 1 0 1 0 MAL1 91104 0 0 0 0 1 0 0 1 3 3 1 0 1 0 MAL1 93363 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93382 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93384 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93390 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93439 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 93457 1 1 1 1 0 1 0 1 1 1 0 0 1 1 MAL1 94008 1 1 1 1 0 1 0 1 1 1 0 0 1 1